Publications

1. Li P, Enea NS, Zuk R, Tan H, Wu AHB, Jaffe AS. Performance characteristics of a high-sensitivity cardiac troponin assay using plasma and whole blood samples. Clin Biochem. 2017 Dec; 50 (18):1249-1252 Epub 2017 Aug 05
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2. Price DL, Li P, Chen CH, Wong D, Yu Z, Chen NG, Yu YA, Szalay AA, Cappello J, Fong Y, Wong RJ. Silk-elastin-like protein polymer matrix for intraoperative delivery of an oncolytic vaccinia virus. Head Neck. 2016 Feb; 38 (2):237-46 Epub 2015 June 16
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3. Kang R, Li P, Wang T, Li X, Wei Z, Zhang Z, Zhong L, Cao L, Heckman MG, Zhang YW, Xu H, Huang C, Bu G, Chen XF. Apolipoprotein E epsilon 2 allele and low serum cholesterol as risk factors for gastric cancer in a Chinese Han population. Sci Rep. 2016 Jan 28; 6:19930
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4. Xiu B, Qiu Y, Zheng WP, Wang XQ, Ding Y, Li P, Chen YH, Wu H, Zhang WJ, Liang AB, Yang ZZ, Stephen A. Expression of CD14+ HLA-DRlow/- monocytes in peripheral blood of patients with non-Hodgkin lymphoma and its significance Journal of Leukemia and Lymphoma. 2016; 25(11):645-50. Epub 1900 Jan 01.
   
5. Jang JS, Lee A, Li J, Liyanage H, Yang Y, Guo L, Asmann YW, Li PW, Erickson-Johnson M, Sakai Y, Sun Z, Jeon HS, Hwang H, Bungum AO, Edell ES, Simon VA, Kopp KJ, Eckloff B, Oliveira AM, Wieben E, Aubry MC, Yi E, Wigle D, Diasio RB, Yang P, Jen J. Common Oncogene Mutations and Novel SND1-BRAF Transcript Fusion in Lung Adenocarcinoma from Never Smokers. Sci Rep. 2015 May 18; 5:9755
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6. Zhu Y, Tchkonia T, Stout MB, Giorgadze N, Wang L, Li PW, Heppelmann CJ, Bouloumie A, Jensen MD, Bergen HR 3rd, Kirkland JL. Inflammation and the depot-specific secretome of human preadipocytes. Obesity (Silver Spring). 2015 May; 23 (5):989-99 Epub 2015 Apr 10
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7. Li P, Yates SN, Lovely JK, Larson DW. Patient-like-mine: A real time, visual analytics tool for clinical decision support Proceedings - 2015 IEEE International Conference on Big Data, IEEE Big Data 2015. 2015; 2865-7.
   
8. Simon GJ, Caraballo PJ, Therneau TM, Cha SS, Castro MR, Li PW. Extending association rule summarization techniques to assess risk of diabetes mellitus. IEEE Transactions on Knowledge and Data Engineering. 2015; 27(1):130-41.
   
9. Asiedu MK, Thomas CF Jr, Tomaszek SC, Peikert T, Sanyal B, Sutor SL, Aubry MC, Li P, Wigle DA. Generation and sequencing of pulmonary carcinoid tumor cell lines. J Thorac Oncol. 2014 Dec; 9(12):1763-71.
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10. Techentin R, Foti D, Al-Saffar S, Li P, Daniel E, Gilbert B, Holmes D. Characterization of semi-synthetic dataset for big-data semantic analysis. 2014 IEEE High Performance Extreme Computing Conference, HPEC 2014. 2014; 7040994.
    
11. Techentin R, Foti D, Li P, Daniel E, Gilbert B, Holmes D, Al-Saffar S. Development of a semi-synthetic dataset as a testbed for big-data semantic analytics. Proceedings - 2014 IEEE International Conference on Semantic Computing, ICSC 2014. 2014; (2):252-3.
    
12. McKinney BA, White BC, Grill DE, Li PW, Kennedy RB, Poland GA, Oberg AL. ReliefSeq: a gene-wise adaptive-K nearest-neighbor feature selection tool for finding gene-gene interactions and main effects in mRNA-Seq gene expression data. PLoS One. 2013; 8(12):e81527. Epub 2013 Dec 10.
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13. Simon GJ, Caraballo PJ, Therneau TM, Cha SS, Castro MR, Li PW. Extending Association Rule Summarization Techniques to Assess Risk of Diabetes Mellitus. IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING (In-Press). 2013.
    
14. Simon GJ, Schrom J, Castro MR, Li PW, Caraballo PJ. Survival association rule mining towards type 2 diabetes risk assessment. AMIA Annu Symp Proc. 2013; 2013:1293-302 Epub 2013 Nov 16
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15. Kolbert CP, Feddersen RM, Rakhshan F, Grill DE, Simon G, Middha S, Jang JS, Simon V, Schultz DA, Zschunke M, Lingle W, Carr JM, Thompson EA, Oberg AL, Eckloff BW, Wieben ED, Li P, Yang P, Jen J. Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues. PLoS One. 2013; 8 (1):e52517 Epub 2013 Jan 31
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16. Oberg AL, Kennedy RB, Li P, Ovsyannikova IG, Poland GA. Systems biology approaches to new vaccine development. Curr Opin Immunol. 2011 Jun; 23 (3):436-43 Epub 2011 May 11
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17. Simon GJ, Li PW, Jack CR Jr, Vemuri P. Understanding atrophy trajectories in Alzheimer's disease using association rules on MRI images. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011:369-76.
    
18. Simon GJ, Kumar V, Li PW. A simple statistical model and association rule filtering for classification. Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2011; 823-31.
    
19. Hellmann I, Mang Y, Gu Z, Li P, de la Vega FM, Clark AG, Nielsen R. Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals. Genome Res. 2008 Jul; 18(7):1020-9. Epub 2008 Apr 14
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20. Brzoska PM, Brown C, Cassel M, Ceccardi T, Di Francisco V, Dubman A, Evans J, Fang R, Harris M, Hoover J, Hu F, Larry C, Li P, Malicdem M, Maltchenko S, Shannon M, Perkins S, Poulter K, Webster-Laig M, Xiao C, Young S, Spier G, Guegler K, Gilbert D, Samaha RR. An efficient and high-throughput approach for experimental validation of novel human gene predictions. Genomics. 2006 Apr; 87(4):437-45. Epub 2006 Jan 09.
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21. Yao A, Charlab R, Li P. Systematic identification of pseudogenes through whole genome expression evidence profiling. Nucleic Acids Res. 2006; 34(16):4477-85. Epub 2006 Aug 31.
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22. Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Gene and alternative splicing annotation with AIR. Genome Res. 2005 Jan; 15(1):54-66.
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23. Scherer SW, Cheung J, MacDonald JR, Osborne LR, Nakabayashi K, Herbrick JA, Carson AR, Parker-Katiraee L, Skaug J, Khaja R, Zhang J, Hudek AK, Li M, Haddad M, Duggan GE, Fernandez BA, Kanematsu E, Gentles S, Christopoulos CC, Choufani S, Kwasnicka D, Zheng XH, Lai Z, Nusskern D, Zhang Q, Gu Z, Lu F, Zeesman S, Nowaczyk MJ, Teshima I, Chitayat D, Shuman C, Weksberg R, Zackai EH, Grebe TA, Cox SR, Kirkpatrick SJ, Rahman N, Friedman JM, Heng HH, Pelicci PG, Lo-Coco F, Belloni E, Shaffer LG, Pober B, Morton CC, Gusella JF, Bruns GA, Korf BR, Quade BJ, Ligon AH, Ferguson H, Higgins AW, Leach NT, Herrick SR, Lemyre E, Farra CG, Kim HG, Summers AM, Gripp KW, Roberts W, Szatmari P, Winsor EJ, Grzeschik KH, Teebi A, Minassian BA, Kere J, Armengol L, Pujana MA, Estivill X, Wilson MD, Koop BF, Tosi S, Moore GE, Boright AP, Zlotorynski E, Kerem B, Kroisel PM, Petek E, Oscier DG, Mould SJ, Dohner H, Dohner K, Rommens JM, Vincent JB, Venter JC, Li PW, Mural RJ, Adams MD, Tsui LC. Human chromosome 7: DNA sequence and biology. Science. 2003 May 2; 300 (5620):767-72 Epub 2003 Apr 10
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24. Li P. Biological Data Extinction. OMICS. 2003 Spr; 7(1):49-50.
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25. Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE. Recent segmental duplications in the human genome. Science. 2002 Aug 9; 297(5583):1003-7.
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26. Mural RJ, Adams MD, Myers EW, Smith HO, Miklos GL, Wides R, Halpern A, Li PW, et al. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science. 2002 May 31; 296(5573):1661-71.
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27. Kerlavage A, Bonazzi V, di Tommaso M, Lawrence C, Li P, Mayberry F, Mural R, Nodell M, Yandell M, Zhang J, Thomas P. The Celera Discovery System. Nucleic Acids Res. 2002 Jan 1; 30(1):129-36.
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28. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigo R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M. The sequence of the human genome. Science. 2001 Feb 16; 291(5507):1304-51.
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29. Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, Hariharan IK, Fortini ME, Li PW, Apweiler R, Fleischmann W, Cherry JM, Henikoff S, Skupski MP, Misra S, Ashburner M, Birney E, Boguski MS, Brody T, Brokstein P, Celniker SE, Chervitz SA, Coates D, Cravchik A, Gabrielian A, Galle RF, Gelbart WM, George RA, Goldstein LS, Gong F, Guan P, Harris NL, Hay BA, Hoskins RA, Li J, Li Z, Hynes RO, Jones SJ, Kuehl PM, Lemaitre B, Littleton JT, Morrison DK, Mungall C, O'Farrell PH, Pickeral OK, Shue C, Vosshall LB, Zhang J, Zhao Q, Zheng XH, Lewis S. Comparative genomics of the eukaryotes. Science. 2000 Mar 24; 287(5461):2204-15.
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30. Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer, SE, Li PW, et al. The Genome Sequence of Drosophila melanogaster. Science. 2000 Mar 24; 287(5461):2185-95.
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31. Letovsky S, Cottingham R, Porter C, Li P. GDB: the Human Genome Database. Nucleic Acid Research. 1998; 26(1):94-9.
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32. Fasman KH, Letovsky SI, Li P, Cottingham RW, Kingsbury DT. The GDB Human Genome Database Anno 1997. Nucleic Acids Res 1. 1997 Jan 1; 25: (1)72-81.
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33. Li P, Waldo D, Pineo S, Foster P. An efficient delivery historical information for the mendelian inheritance in Man Database. JAMIA Symposium Supplement:1995 SCAMC Proceedings. New Orleans,LA,. 1995 Nov; 127-31.
    
34. Li P, Fasman K. Toolkit technology for database federation. 1995 Annual Meeting of CODATA Task Group on Biological Macromolecules. George Mason University, Fairfax, Virginia,. 1995 Jun;
    
35. Li P, Kramer L, Pineo S, Kulp D. Evolving a legacy system: restructuring the mendelian inheritance in Man Database. JAMIA Symposium Supplement: SCAMC Proceedings. Washington, DC.. 1994 Nov; 344-8.
    
36. Pearson P, Francomano C, Foster P, Bocchini C, Li P, McKusick V. The status of online Mendelian inheritance in man (OMIM) medio 1994. Nucleic Acids Res. 1994 Sep; 22(17):3470-3.
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