Publications

1. Mendoza MA, Bhaimia E, Alkhateeb HB, Razonable RR, Thoendel M. Which allogeneic hematopoietic cell transplant recipients have an increased risk for delayed-onset clinically significant cytomegalovirus infection after letermovir prophylaxis? Transpl Infect Dis. 2024 Dec; 26 (6):e14377 Epub 2024 Sept 28
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2. Petri F, Gemayel F, El Zein S, Tande AJ, Thoendel MJ, Berbari EF. Tiny but Nasty: A case report and a review of the literature on Ureaplasma parvum peritonitis. IDCases. 2024; 37:e02015 Epub 2024 June 25
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3. Alabdaljabar MS, Vincent ML, Thoendel MJ, Issa M. Disseminated Abscesses in Culture-Negative Infective Endocarditis. Am J Med. 2023 May; 136 (5):e94-e95 Epub 2023 Feb 03
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4. Yetmar ZA, Thoendel MJ, Bosch W, Seville MT, Hogan WJ, Beam E. Risk Factors and Outcomes of Nocardiosis in Hematopoietic Stem Cell Transplantation Recipients. Transplant Cell Ther. 2023 Mar; 29 (3):206.e1-206.e7 Epub 2022 Dec 13
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5. Hong HL, Flurin L, Thoendel MJ, Wolf MJ, Abdel MP, Greenwood-Quaintance KE, Patel R. Targeted Versus Shotgun Metagenomic Sequencing-based Detection of Microorganisms in Sonicate Fluid for Periprosthetic Joint Infection Diagnosis. Clin Infect Dis. 2023 Feb 8; 76 (3):e1456-e1462
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6. Vijayvargiya P, Thoendel MJ. Sequencing for Infection Diagnostics: Is It Time to embrace the Next Generation? Clin Infect Dis 2022 May 3; 74 (9):1669-1670
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7. Vijayvargiya P, Feri A, Mairey M, Rouillon C, Jeraldo PR, Esquer Garrigos Z, Thoendel MJ, Greenwood-Quaintance KE, Sohail MR, Sampathkumar P, Spychalla MT, Stewart AK, Patnaik MM, Tande AJ, Cruveiller S, Hannet I, Beurdeley P, Patel R. Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia. PLoS One. 2022; 17 (6):e0269405 Epub 2022 June 16
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8. Fida M, Wolf MJ, Hamdi A, Vijayvargiya P, Esquer Garrigos Z, Khalil S, Greenwood-Quaintance KE, Thoendel MJ, Patel R. Detection of Pathogenic Bacteria From Septic Patients Using 16S Ribosomal RNA Gene-Targeted Metagenomic Sequencing. Clin Infect Dis. 2021 Oct 5; 73 (7):1165-1172
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9. Chesdachai S, Almeida NEC, Comba IY, Muppa P, Thoendel MJ. Fusarium rhinosinusitis post chimeric antigen receptor T-cell therapy. IDCases. 2021; 24:e01088 Epub 2021 Mar 26
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10. Thoendel M. Targeted Metagenomics Offers Insights into Potential Tick-Borne Pathogens. J Clin Microbiol 2020 Oct 21; 58 (11)
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11. Corsini C, Esquer Garrigos Z, Welker KM, Thoendel MJ. Toxoplasmosis-Associated Immune Reconstitution Inflammatory Syndrome in an Allogenic Hematopoietic Stem Cell Transplant Recipient. Mayo Clin Proc. 2020 Apr; 95 (4):823-824
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12. Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Yao J, Chia N, Hanssen AD, Abdel MP, Patel R. Comparison of Three Commercial Tools for Metagenomic Shotgun Sequencing Analysis. J Clin Microbiol. 2020 Feb 24; 58 (3)
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13. Yan Q, Wi YM, Thoendel MJ, Raval YS, Greenwood-Quaintance KE, Abdel MP, Jeraldo PR, Chia N, Patel R. Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis. J Clin Microbiol. 2019 Feb; 57 (2) Epub 2019 Jan 30
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14. Vijayvargiya P, Jeraldo PR, Thoendel MJ, Greenwood-Quaintance KE, Esquer Garrigos Z, Sohail MR, Chia N, Pritt BS, Patel R. Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples. PLoS One. 2019; 14 (10):e0222915 Epub 2019 Oct 02
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15. Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Yao JZ, Chia N, Hanssen AD, Abdel MP, Patel R. Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach. Clin Infect Dis. 2018 Oct 15; 67 (9):1333-1338
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16. Ivy MI, Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Hanssen AD, Abdel MP, Chia N, Yao JZ, Tande AJ, Mandrekar JN, Patel R. Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing. J Clin Microbiol. 2018 Sep; 56 (9) Epub 2018 Aug 27
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17. Garg I, Thoendel MJ, Goenka AH. Lymphogranuloma Venereum Proctitis. Clin Gastroenterol Hepatol. 2017 Aug; 15 (8):A29-A30 Epub 2017 Mar 29
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18. Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Chia N, Abdel MP, Steckelberg JM, Osmon DR, Patel R. A Novel Prosthetic Joint Infection Pathogen, Mycoplasma salivarium, Identified by Metagenomic Shotgun Sequencing. Clin Infect Dis. 2017 Jul 15; 65 (2):332-335
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19. Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Yao J, Chia N, Hanssen AD, Abdel MP, Patel R. Impact of Contaminating DNA in Whole-Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis. J Clin Microbiol. 2017 Jun; 55 (6):1789-1801 Epub 2017 Mar 29
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20. Thoendel M, Jeraldo PR, Greenwood-Quaintance KE, Yao JZ, Chia N, Hanssen AD, Abdel MP, Patel R. Comparison of microbial DNA enrichment tools for metagenomic whole genome sequencing. J Microbiol Methods. 2016 Aug; 127:141-145 Epub 2016 May 26
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21. Thoendel M, Horswill AR. Random mutagenesis and topology analysis of the autoinducing peptide biosynthesis proteins in Staphylococcus aureus. Mol Microbiol. 2013 Jan; 87 (2):318-37 Epub 2012 Dec 07
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22. Benson MA, Lilo S, Wasserman GA, Thoendel M, Smith A, Horswill AR, Fraser J, Novick RP, Shopsin B, Torres VJ. Staphylococcus aureus regulates the expression and production of the staphylococcal superantigen-like secreted proteins in a Rot-dependent manner. Mol Microbiol. 2011 Aug; 81 (3):659-75 Epub 2011 June 16
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23. Thoendel M, Kavanaugh JS, Flack CE, Horswill AR. Peptide signaling in the staphylococci. Chem Rev. 2011 Jan 12; 111 (1):117-51 Epub 2010 Dec 21
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24. Boles BR, Thoendel M, Roth AJ, Horswill AR. Identification of genes involved in polysaccharide-independent Staphylococcus aureus biofilm formation. PLoS One. 2010 Apr 14; 5 (4):e10146
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25. Pang YY, Schwartz J, Thoendel M, Ackermann LW, Horswill AR, Nauseef WM. agr-Dependent interactions of Staphylococcus aureus USA300 with human polymorphonuclear neutrophils. J Innate Immun. 2010; 2 (6):546-59 Epub 2010 Sept 10
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26. Thoendel M, Horswill AR. Biosynthesis of peptide signals in gram-positive bacteria. Adv Appl Microbiol. 2010; 71:91-112 Epub 2010 Feb 20
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27. Thoendel M, Horswill AR. Identification of Staphylococcus aureus AgrD residues required for autoinducing peptide biosynthesis. J Biol Chem. 2009 Aug 14; 284 (33):21828-38 Epub 2009 June 11
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28. Malone CL, Boles BR, Lauderdale KJ, Thoendel M, Kavanaugh JS, Horswill AR. Fluorescent reporters for Staphylococcus aureus. J Microbiol Methods. 2009 Jun; 77 (3):251-60 Epub 2009 Mar 03
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29. Kavanaugh JS, Thoendel M, Horswill AR. A role for type I signal peptidase in Staphylococcus aureus quorum sensing. Mol Microbiol. 2007 Aug; 65 (3):780-98 Epub 2007 July 03
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30. Kaneko Y, Thoendel M, Olakanmi O, Britigan BE, Singh PK. The transition metal gallium disrupts Pseudomonas aeruginosa iron metabolism and has antimicrobial and antibiofilm activity. J Clin Invest. 2007 Apr; 117 (4):877-88 Epub 2007 Mar 15
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31. Boles BR, Thoendel M, Singh PK. Rhamnolipids mediate detachment of Pseudomonas aeruginosa from biofilms. Mol Microbiol. 2005 Sep; 57 (5):1210-23
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32. Boles BR, Thoendel M, Singh PK. Self-generated diversity produces "insurance effects" in biofilm communities. Proc Natl Acad Sci U S A. 2004 Nov 23; 101 (47):16630-5 Epub 2004 Nov 16
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