Publications

1. Zath GK, Thomas MM, Loveday EK, Bikos DA, Sanche S, Ke R, Brooke CB, Chang CB. Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR). PLoS Pathog. 2024 Jul; 20 (7):e1012257 Epub 2024 July 01
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2. Yuan Y, Ellis P, Tao Y, Bikos DA, Loveday EK, Thomas MM, Wilking JN, Chang CB, Ye F, Weitz DA. Digital droplet RT-LAMP increases speed of SARS-CoV-2 viral RNA detection. Smart Med. 2024 Jun; 3 (2):e20240008 Epub 2024 June 05
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3. Loveday EK, Welhaven H, Erdogan AE, Hain K, Chang CB, June RK, Taylor MP. Starve a cold or feed a fever? Identifying cellular metabolic changes following infection and exposure to SARS-CoV-2. bioRxiv. 2024 May 23
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4. Fredrikson JP, Domanico LF, Pratt SL, Loveday EK, Taylor MP, Chang CB. Single-cell herpes simplex virus type 1 infection of neurons using drop-based microfluidics reveals heterogeneous replication kinetics. Sci Adv. 2024 Mar; 10 (9):eadk9185 Epub 2024 Feb 28
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5. Fredrikson JP, Brahmachary PP, June RK, Cox LM, Chang CB. Pericellular Matrix Formation and Atomic Force Microscopy of Single Primary Human Chondrocytes Cultured in Alginate Microgels. Adv Biol (Weinh). 2024 Jan; 8 (1):e2300268 Epub 2023 Sept 08
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6. Hashimi M, Sebrell TA, Hedges JF, Snyder D, Lyon KN, Byrum SD, Mackintosh SG, Crowley D, Cherne MD, Skwarchuk D, Robison A, Sidar B, Kunze A, Loveday EK, Taylor MP, Chang CB, Wilking JN, Walk ST, Schountz T, Jutila MA, Bimczok D. Antiviral responses in a Jamaican fruit bat intestinal organoid model of SARS-CoV-2 infection. Nat Commun. 2023 Oct 28; 14 (1):6882
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7. Zath GK, Sperling RA, Hoffman CW, Bikos DA, Abbasi R, Abate AR, Weitz DA, Chang CB. Rapid parallel generation of a fluorescently barcoded drop library from a microtiter plate using the plate-interfacing parallel encapsulation (PIPE) chip. Lab Chip. 2022 Nov 22; 22 (23):4735-4745
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8. Loveday EK, Sanchez HS, Thomas MM, Chang CB. Single-Cell Infection of Influenza A Virus Using Drop-Based Microfluidics. Microbiol Spectr. 2022 Oct 26; 10 (5):e0099322 Epub 2022 Sept 20
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9. Mahdieh Z, Cherne MD, Fredrikson JP, Sidar B, Sanchez HS, Chang CB, Bimezok Bimczok D, Wilking JN. Granular Matrigel: restructuring a trusted extracellular matrix material for improved permeability. Biomed. Mater.. 2022; 17:045020.
   
10. Fredrikson JP, Brahmachary P, Archambault Z, Erdogan E, Wilking JN, June RK, Chang CB. Metabolomic profiling and mechanotransduction of single chondrocytes encapsulated in alginate microgels Cells. 2022; 11(5):900.
    
11. Cherne MD, Sidar B, Sebrell TA, Sanchez HS, Heaton K, Roe MM, Gentry AB, Chang CB, Walk S, Jutila M, Wilking JN, Bimczok D. A synthetic hydrogel, VitroGel® ORGANOID-3, improves immune cell-epithelial interactions in a tissue chip co-culture model of human gastric organoids and dendritic cellsc Frontiers in Pharmacology. 2021; 12:707891.
    
12. Loveday EK, Hain KS, Kochetkova I, Hedges JF, Robison A, Snyder DT, Brumfield SK, Young MJ, Jutila MA, Chang CB, Taylor MP. Effect of inactivation methods on SARS-CoV-2 virion protein and structure Viruses. 2021; 13:562.
    
13. Loveday EK, Zath GK, Bikos D, Jay ZJ, Chang CB. Screening of additive formulations enables off-chip drop qRT-PCR (OCD-qPCR) quantification of single influenza A virus genomes Analytical Chemistry. 2021; 93(10):4365-4373.
    
14. LeFevre TB, Bikos DA, Chang CB, Wilking JN. Measuring colloid-surface interaction forces in parallel using fluorescence centrifuge force microscopy Soft Matter. 2021; 17:6326-6336.
    
15. Zambare N, Naser N, Gerlach R, Chang CB. Mineralogy of microbially induced calcium carbonate precipitates formed using single cell drop-based microfluidics Scientific Reports. 2020; 10(1):1-11.
    
16. Pratt SL, Zath GK, Akiyama T, Williamson KS, Franklin MJ, Chang CB. DropSOAC: Stabilizing microfluidic drops for time-lapse quantification of single-cell bacterial physiology Frontiers of Microbiology. 2019; 10:2112.
    
17. Rotem A, Serohijos AWR, Chang CB, Wolfe JT, Fischer AE, Mehoke TS, Zhang H, Tao Y, Ung WL, Choi JM, Rodrigues JV, Kolawole AO, Koehler SA, Wu SK, Thielen PM, Cui N, Demirev PA, Giacobbi NS, Julian TR, Schwab K, Lin JS, Smith TJ, Pipas JM, Wobus CE, Feldman AB, Weitz DA, Shakhnovich EI. Evolution on the biophysical fitness landscape of an RNA virus Molecular Biology and Evolution. 2018; 35(10):2390-2400.
    
18. Akiyama T, Williamson KS, Schaefer R, Pratt S, Chang CB, Franklin MJ. Rescuscitation of pseudomonas aeruginosa from dormancy requires hibernation promoting factor (PA4463) for ribosome preservation Proceedings of the National Academy of Sciences. 2017; 114:3204-3209.
    
19. Franklin MJ, Chang CB, Akiyama T, Bothner B. New technologies for studying biofilms Mirobiology Spectrum. 2015; 3(4):1-23.
    
20. Tao Y, Rotem A, Zhang H, Chang CB, Basu A, Kolawole AO, Koehler SA, Ren Y, Lin JS, Pipas JM, Feldman AB, Wobus CE, Weitz DA. Rapid, targeted and culture-free viral infectivity assay in drop-based microfluidics Lab on a Chip. 2015; 15:3954-3961. Epub 2021 Jan 01.
    
21. Tao Y, Rotem A, Zhang H, Cockrell SK, Koehler S, Chang CB, Ung L, Lin JS, Feldman AB, Wobus CE, Pipas JM, Weitz DA. Artifact-free quantification and sequencing of rare recombinant viruses using drop-based microfluidics ChemBioChem. 2015; 16:2167-2171.
    
22. Zhang H, Cockrell SK, Kolawole AO, Rotem A, Serojijos AWR, Chang CB, Ye T, Mehoke TS, Lin JS, Giacobbi NS, Feldman AB, Shaknovich E, Weitz DA, Wobus C, Pipas JM. Isolation and analysis of rare norovirus recombinants from co-infected mice using drop-based microfluidics Journal of Virology. 2015; 89:7722-7734.
    
23. Fischer AE, Wu SK, Proescher JBG, Rotem A, Chang CB, Zhang H, Tao Y, Mehoke TS, Thielen PM, Kolawole AO, Smith TJ, Wobus CE, Weitz DA, Lin JS, Feldman AB, Wolfe JT. A high-throughput drop microfluidics system for virus culture and analysis Journal of Virological Methods. 2015; 213:111-117.
    
24. Chang CB, Wilking JN, Kim SH, Shum HC, Weitz DA. Monodisperse emulsion drop microenvironments for bacterial biofilm growth Small. 2015; 11:3954-3961.
    
25. Wilking JN, Chang CB, Fryd MM, Porcar L, Mason TG. Shear-induced disruption of dense nanoemulsion gels Langmuir. 2011; 27:9.
    
26. Antelman J, Chang CB, Weiss S, Michalet X. Nanometer distance measurements between multicolor quantum dots Nano Letters. 2009; 9(5):2199.
    
27. Hanson JA, Chang CB, Graves SM, Li Z, Mason TG, Demin TJ. Nanoscale double emulsions stabilized by single component block copolypeptides Nature. 2008; 455:85.
    
28. Chang CB, Knobler CM, Gelbart WM, Mason TC. Curvature dependence of viral protein structures on encapsidated nanoemulsion droplets ACS Nano. 2008; 2:281-286.
    
29. Mason TG, Wilking JN, Meleson K, Chang CB, Graves SM. Nanoemulsions: Formation, structure, and physical properties Journal of Physics: Condensed Matter. 2006; 18:R635.
    
30. Wilking JN, Graves SM, Chang CB, Meleson K, Lin MY, Mason TG. Dense cluster formation during aggregation and gelation of attractive slippery nanoemulsion droplets Physical Review Letters. 2006; 96:015501.
    
31. Ohline SM, Lee S, Williams S, Chang CB. Quantification of methylene blue aggregation on a fused silica surface and resolution of individual absorbance spectra Chemical Physics Letters. 2001; 346:9-15.