Large-Scale Datasets

Processed data

The cBioPortal was developed at Memorial Sloan Kettering Cancer Center to provide a user-friendly interface for interrogating multiple, interrelated genomic, methylomic and transcriptomic (multi-omic) data sets.

The cBioPortal contains all the human tumor data generated by The Cancer Genome Atlas.

Using this same portal, the multi-omic data available on the lines from the Brain Tumor PDX National Resource have been uploaded into cBioPortal. This enables users to readily query all the multi-omic data at the gene level.

Processed data from the Brain Tumor PDX National Resource are available on cBioPortal. The data can be downloaded on the Data Sets link under Brain Tumor PDXs (Mayo Clinic, 2019) by clicking the download icon.

Raw data

The raw WES, RNAseq and methylation data are available on the NCBI Gene Expression Omnibus (GEO) website using these links:

• cBioPortal WES raw data.
• cBioPortal RNA-seq raw data.
• cBioPortal DNA array methylation raw data.